MolecularDiffusion.utils.file¶

Attributes¶

`compute_md5`(file_name[, chunk_size])	Compute MD5 of the file.
`download`(url, path[, save_file, md5])	Download a file from the specified url.
`extract`(zip_file[, member])	Extract files from a zip file. Currently, `zip`, `gz`, `tar.gz`, `tar` file types are supported.
`get_line_count`(file_name[, chunk_size])	Get the number of lines in a file.
`smart_open`(file_name[, mode])	Open a regular file or a zipped file.

MolecularDiffusion.utils.file.compute_md5(file_name, chunk_size=65536)¶

Compute MD5 of the file.

Parameters:

MolecularDiffusion.utils.file.download(url, path, save_file=None, md5=None)¶

Download a file from the specified url. Skip the downloading step if there exists a file satisfying the given MD5.

Parameters:

url (str) – URL to download
path (str) – path to store the downloaded file
save_file (str, optional) – name of save file. If not specified, infer the file name from the URL.
md5 (str, optional) – MD5 of the file

MolecularDiffusion.utils.file.extract(zip_file, member=None)¶

Extract files from a zip file. Currently, zip, gz, tar.gz, tar file types are supported.

Parameters:

zip_file (str) – file name
member (str, optional) – extract specific member from the zip file. If not specified, extract all members.

MolecularDiffusion.utils.file.get_line_count(file_name, chunk_size=8192 * 1024)¶

Get the number of lines in a file.

Parameters:

MolecularDiffusion.utils.file.smart_open(file_name, mode='rb')¶

Open a regular file or a zipped file.

This function can be used as drop-in replacement of the builtin function open().

Parameters: